PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N01466.1.p
Common NameLOC105960524, MIMGU_mgv1a009324mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family WRKY
Protein Properties Length: 346aa    MW: 37421.4 Da    PI: 5.6026
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N01466.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30168226259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YY+C++  gC+++k+ver+++dp +++itY+ eHnh+
  Migut.N01466.1.p 168 SDMWSWRKYGQKPIKGSPYPRGYYKCSTLtGCMARKQVERNKSDPGMFVITYTAEHNHP 226
                       79************************9988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-31157228IPR003657WRKY domain
SuperFamilySSF1182903.14E-26162228IPR003657WRKY domain
PROSITE profilePS5081133.889162228IPR003657WRKY domain
SMARTSM007741.8E-35167227IPR003657WRKY domain
PfamPF031066.9E-25169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEDDWDLHAV VRSCTSSTTT TTAAAAAAAE QTPRTQLFST TSDQDCSSLQ DLLFEPRREN  60
NSSEELHDLC KPFFPKKTIN SEKALFIPPQ RLLPVSPLSV LGGLQDLSFE QAVVKQPPPK  120
TQIHHKNQLF SVVNGSKPTS SHHPNPRSKK RKNPLKKVCH VSAEGLSSDM WSWRKYGQKP  180
IKGSPYPRGY YKCSTLTGCM ARKQVERNKS DPGMFVITYT AEHNHPVPTH RNSLAGSSRN  240
KPAEAPNSDE PKKAASSSSE MLEDSSQPEE DFAAGVDLDD EDDDLSPSNM ALDDSFFAGL  300
DDLDGEEGGE CFSTTDRLST SLQFPWLASS GTAASGAAAA AGGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-181662281677Probable WRKY transcription factor 4
2lex_A3e-181662281677Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840165.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A022R3960.0A0A022R396_ERYGU; Uncharacterized protein
STRINGSolyc01g095100.2.14e-91(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-62WRKY family protein